Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttaatgtcttttgcttaccttctaaacggaatcagaccttcagattttttattctttttacgaagaagtggatttatttgtcaaaaatgttactccagtttaaagttggcataacggagacaaggtaagaagttatggagatgagatgacaaactactagtattgcaatttcggttttctagGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCT
Basic information
species | Glycine max |
transcript | GLYMA19G36230.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 7
gtatgcttaatgtcttttgcttaccttctaaacggaatcagaccttcagattttttattctttttacgaagaagtggatttatttgtcaaaaatgttactccagtttaaagttggcataacggagacaaggtaagaagttatggagatgagatgacaa-actactagtattgcaattt--cggttttctagGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCT
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--------------------------------------------------------------------------------------------gtaatccttca-cttatagagggtctaa--gcttcttggtaagaattttcttagcatttctcacagtgcaattaaaactcttgctcaatgcaattctagGTGATCCTGGACTAGGCAAGAGTCAACTGCTACAGGCTGCAGCAGCTGTTTCTCCACGGGGTATATATGTTTGTGGGAATACAACAACAAATGCTGGTCT
upper sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 7
gtatgcttaatgtcttttgcttaccttctaaacggaatcagaccttcagattttttattctttttacgaagaagtggatttatttgtcaaaaatgttactccagtttaaagttggcataacggagacaaggtaagaagttatggagatgagatgacaaactactagtattgcaatttcggttttctagGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCT
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gtatgcataa-gtcttct-cttgctcatataatggtgctaaaccttaacaattattctactttctatgtcagtgagagt---------gaaaa-------ctatcttacatttcattcaactggaagtcaatgttatgcta---agatgagcttgaaaaatgctaatgtcata--------tcattagGTGATCCTGGACTCGGTAAAAGCCAACTATTGCAAGCAGCAGCTGCCATTTCTCCACGTGGCATTTATGTGTGTGGCAATGCTACAACCAATGCTGGGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaagttatggagatgagatgacaaactactagtattgcaatttcggttttctagGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCT
ttttct CT-rich tract
tagtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttaatgtcttttgcttaccttctaaacggaatcagaccttcagattttttattctttttacgaagaagtggatttatttgtcaaaaatgttactccagtttaaagttggcataacggagacaaggtaagaagttatggagatgagatgacaaactactagtattgcaatttcggttttctagGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT