1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccttgagcatgactcaaatggcctaaatgtgtgtagtcatcatcatactaatatagttgtcatacctcattaattgtatgatttcttatttaatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCGGGGAGCAG
species | Glycine max |
transcript | GLYMA19G35780.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCTCGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|5760072|gb|AI965435.1|AI965435
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|16105795|gb|BI893535.1|BI893535
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCTCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|9984976|gb|BE659084.1|BE659084
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|192307889|gb|FG999368.1|FG999368
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|214007669|gb|DB986035.1|DB986035
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCC-AAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|21994910|gb|BQ786438.1|BQ786438
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|58021806|gb|CX708547.1|CX708547
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCEST: gi|151406971|gb|EV276786.1|EV276786
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
EST: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAG AGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
genomic: TGGGCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGgttaagattt ... taatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGC
tactaatatagttgtcatacctcattaattgtatgatttcttatttaatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCGGGGAGCAG
tttcttattt CT-rich tract
tcattaattgtatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgagcatgactcaaatggcctaaatgtgtgtagtcatcatcatactaatatagttgtcatacctcattaattgtatgatttcttatttaatgtgcagAGTTTGTGCAAGTATTATCTAACTCTCACTTGAAAATGCGTGTTTGGGAGCGGGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - gcatgac
- - - - - - - - - - gcctaaa
- - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga