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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaatagttgctgagttattttcgattctacggttactaagtcaagttgctaaacactaatctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 4
-----------------------gttgtaatagttgctgagttattttcgattctacggttact--aagtcaagttgctaaacact--aatctatgcaca------gATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
                        |  | ||  ||  |     |       || | | || |||  ||      |||   | || |    | ||||||||      | | ||||| ||||| || ||||||||||| || |||||||||||||| || || ||||| ||  | ||||| |||||||||||  |||||||  || |||
gtaaaacaaggcgattcaattgattcatcattttttttagtgaaaccatatttttccagtgactctaaaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA

upper sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
------------------------------gttgtaata-gttgctg-agttattttcgattcta-cggttactaagtcaagttgctaaacactaatctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
                              ||  || |  |  |||  | || ||  |  |||||    |||||   |   ||| |  ||      |  |||  ||| | ||||| ||||| || |||||||||||||| |||||||||||||| || || ||||| ||  ||||||| |||||||||||  |||||||  || |||
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaatatttactcctttccgtttc--aatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA

upper sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------gttgtaatagttgctgagttattttcgattctacggttactaagtcaagttgctaaacacta-atctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
            ||| | ||  |      |   | ||  ||  |   |||      | | |  ||||||  || |  ||| | ||| |||||||  | ||||||||||| || || || || |||||||||||||| || || |||||  |||||||||||||||| ||  | |||||  |  | |
gtataaatttgattgcattaactttct--tcgctgtccctttcattattagaggtacgattgtctaaactttacacatattctcagGTCGACCGTATTCTTTACTCATCTGTCGTATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGATGTTCTTGTCA

upper sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
gttgtaatagttgctgagttattttcgattctacggttactaagtcaa------gttgctaaacacta-atctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
||  | |    | || |   |||||      |||  ||   |  ||||      |||||||||   || ||  |||  ||| | ||||| ||||| ||||| |||||||| || || ||||||||||| |||||||| |||||| | |||||||||| ||| ||| ||||||||||| |||
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA

upper sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------------gttgtaatagttgctgagtt---attttc--gattctacggtt--actaagtcaa-gttgctaaacactaatcta--tgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
                       | |||  | |  ||  ||   || |||  ||      || |   || |  ||  | | || ||   ||| ||   |   ||| | || ||  |  | |||||||||||||| ||||| ||||| |||||||| || || |||||| ||||||||||    |||||| | |||||  |  | |
gtacgtcattgccagtgactaactctaaacgatcttgtcttcatatcttcacgagctgttggcttggctcaaccaccgctccttaatcttaacctcatttttcagGTTGATCGTATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|193399186|gb|FK361734.1|FK361734
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|10844730|gb|BF067948.1|BF067948
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAATTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|193487362|gb|FK451853.1|FK451853
EST:     CGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCCCACAACTATGGGTCT
genomic: CGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|254335061|gb|GR844846.1|GR844846
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|9901982|gb|BE610950.1|BE610950
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|193534902|gb|FK489066.1|FK489066
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|7589208|gb|AW704987.1|AW704987
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|193531554|gb|FK491388.1|FK491388
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|22523592|gb|BU082403.1|BU082403
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|193314904|gb|FK281404.1|FK281404
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTAT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTAT
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACGAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTGTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|15000402|gb|BI321216.1|BI321216
EST:     AAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|208156025|gb|GD954529.1|GD954529
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
EST: gi|207833133|gb|GD801810.1|GD801810
EST:     AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG                         ATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGgttgtaatag ... ctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcgattctacggttactaagtcaagttgctaaacactaatctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA
                                      cactaat  putative branch site (score: 2)
                                         taatctat  TA-rich tract