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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaaaacttttcatctttaattttgccagatactaccggattatttaaatgaattgcattaaactgaacaatgttgtgctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA

Basic information

species Glycine max
transcript GLYMA19G34430.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34430.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 3'ss of exon 6
gttacaaaacttttcatctttaattttgccagatactaccggattatttaaatgaattgcattaaactgaacaatgttgtgctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
                |||||  | ||       |  ||    |  | | | |   | ||  | |  |    || |||     ||   ||||||||| || |||||||||||||| ||||||||||| |||||| | || 
---------------gtcttttttgtttttctgcatcacaatgtcttgtcattctctggc--tgagatactaaaagtt---tcttaaatttgcagGCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACG

upper sequence: GLYMA19G34430.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G159295_T01 (Zea mays), 3'ss of exon 6
gttacaaaacttttcatctttaattttgccagatactaccggattatttaaatgaattgcattaaactgaacaatgttgtgctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
|||     | |||   ||||||    || | || |  |||      ||   ||    |   || |  |    || | | |  |     | ||||||| |||||||||||| |||| ||||||||||| |||||| | || 
gttt--gtattttgtttcttta--cctgacggacataacctatcagttgtcattgtcttggttgag-tatttaaagctattataa---tctgcagGCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACG

upper sequence: GLYMA19G34430.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0141g00590.t01 (Vitis vinifera), 3'ss of exon 6
gttacaaaacttttcatctttaattttg-ccagatactaccggattatttaaatgaattgcattaaactgaacaatgttgtgctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
                |  | | | ||  ||| || | |     ||  |||||   ||     | || |  |  |||        |   ||||||||| || || |||||||||||||||||||| ||||||||  |||| 
---------------gttgtaactgttatccaaatgccatttattttgttaaacacat---gctgaattctaagatgaatcctcctaaatttgcagGCTTACTTTATGCAAATTGACGGCACATTGAATAAATTATCCACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232059|gb|BE800947.1|BE800947
EST:     CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAG                         GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
genomic: CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGgttacaaaac ... gcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattatttaaatgaattgcattaaactgaacaatgttgtgctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
                                         ctttgccttt  CT-rich tract
     atttaaatgaattgca  TA-rich tract