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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaacccctttttattactcatcaatttcagacattgtatttcttaaaaaacccattgactttcaaatttgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCAT

Basic information

species Glycine max
transcript GLYMA19G34390.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331130|gb|FK020350.1|FK020350
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|192326255|gb|FK017617.1|FK017617
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|20815087|gb|BQ299565.1|BQ299565
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|151405354|gb|EV275168.1|EV275168
EST:     AATCCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCC-GAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|58020561|gb|CX707303.1|CX707303
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|58020732|gb|CX707474.1|CX707474
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|192325118|gb|FK019064.1|FK019064
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|193411805|gb|FK380340.1|FK380340
EST:     ATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATACTG
genomic: ATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAAT-CTG
EST: gi|20814943|gb|BQ299421.1|BQ299421
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
EST: gi|20815079|gb|BQ299557.1|BQ299557
EST:     AATCCCGAGGAAGCACATGCCAGAAGGGGAG                         CTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA
genomic: AATCCCGAGGAAGCACATGCCAGAAGGGGAGgtaaggaacc ... tgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcagacattgtatttcttaaaaaacccattgactttcaaatttgtatatcagCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCAT
                             cattgac  putative branch site (score: 3)
         attgtatttcttaaaa  TA-rich tract