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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatatacttggatttatgtatgttgttgggcacgtgtaagatagtaacaccctatcaatgctaatgcatttcctatcctctgtataaattaatattgaacttacatacttcaatggtttctcagTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGG

Basic information

species Glycine max
transcript GLYMA19G33030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------------------------------------gtagatatacttggatttatg-tatgttgttgggcacgtgtaagatagtaacaccctatcaatgctaatgc-atttcctatcctct-gt--ataaattaatattgaacttacatacttcaatggtttctcagTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGG
                                                                  |    | || |  | | ||  |||||  |  |      ||   | | |      |||     ||  |||  |||  |||  ||| ||   ||  | ||| || |  |    | | ||||| |||||||||||||||| ||||  ||||||||||||| ||| |  ||||
gtacagaagctctctctctcctctcccctcacccttcccctccccatcctcaatgcgccatataacattgttgctggcgtgtgtggcatgttcatatggttaactagacttgcatgtatttatattatcttgtgctgttttttattttcttgttggtagctcaatcttaagttggtgtccatcaattgtttctcagTGCAGGTTTGATCCTGGCATCCTGGTTTTTGACCCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctatcctctgtataaattaatattgaacttacatacttcaatggtttctcagTGCAGGTCTGATATTGGCATCCTGGTTATTGTCAATTGG
                            aacttac  putative branch site (score: 2)
                                               tttctc  putative PPT
             tataaattaatattga  TA-rich tract