Sequence
atgc intronic sequence ATGC exonic sequence...ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
Basic information
species | Glycine max |
transcript | GLYMA19G32190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 4
ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacct-gtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
| | | | || | ||| ||| || | | || || ||| | || | || || | | || || ||||||| || || || || ||||| || || || || ||||| |||||||| |||| || |||||||| || |||||||||||||| || |||||||
---------gtatgaatgcgggcatcagtttcaggac--atctgacttatatatgat-tatgatctcactgctattatccatggcttcattccactgc-agGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA
upper sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 11
ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaac----atattg-agtaccctttttttgtt----agGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
|||||||| || | ||| | | | || | | || ||| ||| || || || | | | | ||| || |||| || || | | ||||| ||||| || ||||| ||||| ||||||||||| ||||| || |||||||| |||||||| |||||||| || |||||||
-----------------gtataaattgaa-----aattagctccaagacatgaataatgactattcgtgattattcccaatgctgtagaatcttgtctttattccacagGCGTCGGGCTATACCGTGGCAATGGTTGGAGATGGCATCAACGACTCACCAGCTCTTGTCGCTGCAGATGTTGGAATGGCGATTGGTGCAGGCACAGACA
upper sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
|||| | | ||| | || |||| ||| ||| | | | | |||| || | | || ||||||| || | ||||| ||||| || ||||| ||||| || || ||||| ||||| || ||| |||| ||||||||||||||||| || |||||||
---------------gtatgaatgtgaaaaatagttccaa---gacatgcataatgatcattctcaatctgttaaatatcatgt---cctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
taccctttttttgtt CT-rich tract
taacatatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -cactgaa
- - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - -ctcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgtg