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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtctttttacaagctttttgcatcaacttggaaatatatatttattttgtcgtttagttaaaattcttacgaatctcaaattttcacttggatgccatgctttcagGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCGATG

Basic information

species Glycine max
transcript GLYMA19G29010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29010.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G033619_T01 (Zea mays), 3'ss of exon 5
gtatggtctttttacaagctttttgcatcaacttggaaatatatattta--ttttgtcgtttagttaaaattcttacgaatctcaaattttcacttggatgc-catgctttcagGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCGATG
                     | ||    |||||| ||   | |  | |  |||| |   | | || ||||  ||     |||||   ||| |  |  |||  |     |  ||||||||||| | || || || |||||||| ||||||||  | ||||| ||| || |||| ||||| ||| ||||||||||||| || || || || ||||
--------------------gtatgttagaacttgaaaccttgttctcaacttttttttgtcaatttaaatctttttt--tctca---tttgatctatatgttcgcctctgtagGCATGGGCAAGACTGTGTAAATGCCTTGGTCAGGATTTCTTACCATACATGAGTGTTGTTATGCCCCCTCTGCTCCAGTCTGCTCAGCTCAAACCAGATG

upper sequence: GLYMA19G29010.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------------------------------------gtatggtc---tttttacaagctttttgcatcaacttggaaatatatatttattttgtcgtttagttaa--aattcttacgaatctcaaattttcacttggatgccatgctttcagGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCGATG
                                                                |||| |   |  |||  |    |||   || |     ||  || | |||  |  ||| |||   |||  ||   |||  ||   ||||   | |  ||  | || |  || |||||||||||  | ||||||||||||||||| |||||||| || || || |||  | |||| ||||| || ||||| || ||||| || |||||||| ||||
gtatgctttttgcataagctacagagaccttcacttaaatgttctgcatttctttgtcttttaaatggacaaatgcttaggaatactttttgtctaac--aaacaatttttttgataagtcttttgtctaacaaacaattaaaaagaacaaaacataatatg--tacctttgttgcagGCATGGGCCAGACTTTGCAAGTGCCTTGGCCAGGATTTCCTTCCTTACATGAATGTTGTCATGCCCCCCTTGCTTCAATCTGCTCAGCTTAAGCCTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagttaaaattcttacgaatctcaaattttcacttggatgccatgctttcagGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCGATG
            ttcttac  putative branch site (score: 2)
                                              tgctttc  putative PPT
      ttaaaattctta  TA-rich tract