1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtctcctcatataagcaatagttgaattatataataaggaaaaggtctaaggctaatttgtttttattataattttatccatcttttggtacggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAG
species | Glycine max |
transcript | GLYMA19G28770.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCAEST: gi|14990362|gb|BI316035.1|BI316035
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
EST: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCAEST: gi|193422603|gb|FK387640.1|FK387640
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
EST: GTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG GGAAAATGCTAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCEST: gi|37997102|gb|CF808691.1|CF808691
genomic: GTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGC-AAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATC
EST: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
tctaaggctaatttgtttttattataattttatccatcttttggtacggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAG
ggctaat putative branch site (score: 3)
taatttgtttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcctcatataagcaatagttgaattatataataaggaaaaggtctaaggctaatttgtttttattataattttatccatcttttggtacggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-tctcctc
- - - - - - - - - - - - - - - - - -aaggaaaa