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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatctcttttaccaaaggttcttcttgttctatttatagttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG

Basic information

species Glycine max
transcript GLYMA19G23610.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G23610.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
gtatgtcatctcttt---taccaaa-ggttcttcttgttcta--tttata-gttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
|| |||||||| ||    |||||||  | | ||    |   |  |||||    | |  |   ||  ||  |||   || | |   |    | ||||| ||| ||||||||||||||||||||||||||||| || ||| |||| |||
gtgtgtcatctattccactaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG

upper sequence: GLYMA19G23610.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtatgtcatctcttttaccaa-aggttcttcttgttct-----atttata-gttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
|| |||||| | ||  || |  |  ||  |  ||   |     |||||||   | |  ||  ||  |   | |   || || || | |  | ||||||||| |||||||||||||||||||| |||||||| || ||||||||  ||
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttct-tccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718453|gb|BW666251.1|BW666251
EST:     TGGCTCGATAGCTAACTATGCACAAATGTCTGTGCAATCAATCGATCAAA                         ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
genomic: TGGCTCGATAGCTAACTATGCACAAATGTCTGTGCAATCAATCGATCAAAgtatgtcatc ... tgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
EST: gi|192331772|gb|FK024876.1|FK024876
EST:     TGGCTCGATAGCTAACTATGCACAAATGTCTGTGCAATCAATCGATCAAA                         ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
genomic: TGGCTCGATAGCTAACTATGCACAAATGTCTGTGCAATCAATCGATCAAAgtatgtcatc ... tgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttatagttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG
                                    ttccatcttt  CT-rich tract
             aattgattaacata  TA-rich tract