1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagtacgtttaaatctgtgaaagtctatgaattgaagttttgacctcttagatctatataatagcacaggtgtatgacattggtttaacctcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAG
species | Glycine max |
transcript | GLYMA19G22730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|151398506|gb|EV268377.1|EV268377
genomic: GGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|209704258|gb|BW683486.1|BW683486
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: AAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|254323478|gb|GR835924.1|GR835924
genomic: AAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|254323479|gb|GR835925.1|GR835925
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|192311508|gb|FK005239.1|FK005239
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAGGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|16278041|gb|BI942695.1|BI942695
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|208264998|gb|GE065326.1|GE065326
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|213595473|gb|DB962413.1|DB962413
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: AAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|8282655|gb|BE020216.1|BE020216
genomic: AAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGNAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGACAGATGCTCTGGTGEST: gi|192311498|gb|FK005229.1|FK005229
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAGGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|254317061|gb|GR826006.1|GR826006
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTA-CCTGGCAGATGCTCTGGTGEST: gi|209710547|gb|BW661979.1|BW661979
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: TGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACGCAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|151407204|gb|EV277019.1|EV277019
genomic: TGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|192311499|gb|FK005230.1|FK005230
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAGGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|209724515|gb|BW658374.1|BW658374
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|192311507|gb|FK005238.1|FK005238
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAGGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGEST: gi|151397711|gb|EV267584.1|EV267584
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
EST: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
genomic: GTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaattt ... tcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTG
tcttagatctatataatagcacaggtgtatgacattggtttaacctcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAG
gtttaac putative branch site (score: 3)
cctcttgt CT-rich tract
atctatataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtacgtttaaatctgtgaaagtctatgaattgaagttttgacctcttagatctatataatagcacaggtgtatgacattggtttaacctcttgtgtagGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - atctgtg
- - - - - - - - - - - gtctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga