Sequence
atgc intronic sequence ATGC exonic sequencegtagtaaatgattgcttattggctctcatattgcttgcttcataaacttggcctaatccctctccatttgacttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
Basic information
| species | Glycine max |
| transcript | GLYMA19G22690.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 3'ss of exon 6
gtagtaa--atgattgcttattggctctcatattgcttgcttcataaacttggcctaatccctctccatttgacttgtattac-cagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
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gtaatggctataattttgtcaagaatgtgggatgatttcctccgaatacttgac-taactacttttgaaacaa-tcgcatttcacagCTTGTGCTTCGTTTTGCCAACCGCTTGTTCTTGCCTCTTTGGAACCGTGACAATATTGATAATATACAG
upper sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os02g38840.2 (Oryza sativa), 3'ss of exon 6
gtagtaaatgattgcttattggctc-tcatattgcttgcttcataaacttggcctaatccctctccatttgacttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
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---gtaagttgt-----atggcttcgtctagttagttgaacgatatattccatgctactataacatatttcaat-atatt-tcagCTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAG
upper sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 6
gtagtaaatgattgcttattggct-ctcatattgcttgcttcataaacttggcctaatccctctccatttgac-ttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
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gtaatggatg-taacattttgtcaacttgctttacatttcacaaatacttg-tctaattattttttaaccaatatcatgtcac-agCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG
upper sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G031107_T01 (Zea mays), 3'ss of exon 6
gtagtaaatgattgct-tattggctctcatattgcttgcttcataaacttggcctaatccctctccatttgacttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
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gtaatatgtgtgagccatagtgaactgtatat-----gctttatatatgcaac----tgtttcttatactgccatgtttg--cagCTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAG
upper sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------gtagtaaatgattgcttattggctctcatattgcttgcttcataaacttggcctaatccctctccatttg--acttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
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gtaatacatgtatcataaaaattgtgtctttatttgataaaaaaaaataataataaaatgtttgtctttgtatgccctattttg-aaatgtctgctgatttctctccttatgccacttacatttgcagTTGGTACTTCGTTTTGCAAATCGCATGTTTTTGCCCCTCTGGAACCGTGACAACATTGATAATGTACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192301055|gb|FG990125.1|FG990125EST: AGATTTATCGAATTGATCACTACTTAG-AAAGGAACTTGTGCAGAATATG TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGAC
genomic: AGATTTATCGAATTGATCACTACTTAGGAAAGGAACTTGTGCAGAATATGgtagtaaatg ... gtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgcttgcttcataaacttggcctaatccctctccatttgacttgtattaccagTTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG
ttcataaa TA-rich tract
