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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatacgtacttcatttgattgcatgtaatttggaaaaaaagacatggtttggcaatgactttgtttctttattacgagcttcattataagatttacagttggtcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG

Basic information

species Glycine max
transcript GLYMA19G22520.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22520.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 6
gtatgatacgtacttcatttgattgcatgtaatttggaaaaaaagacatggtttggc-aatgactttgtttctttattacgagcttcattataagatttacagttggtcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG
                        | ||   ||||   | | | |   |  |||  |  || ||  |||     |  |     ||| | |||      | | | |  ||    | |||||||| || || ||||||||||| |||||| | || |||||||||||||||||| | |||||| |||||||| |  | ||||||
------------------------gtatagtattttctatatatggggttttttaactgatcacaatgtcaagctgct----cctttactatcg----tcctggtattctacat-agGTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287126|gb|BI471017.1|BI471017
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|8282740|gb|BE020301.1|BE020301
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|8283385|gb|BE020946.1|BE020946
EST:     AGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: AGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|197661912|gb|FD480321.1|FD480321
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|20815055|gb|BQ299533.1|BQ299533
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|21994328|gb|BQ785856.1|BQ785856
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|19348347|gb|BM892879.1|BM892879
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
EST: gi|26058132|gb|CA801046.1|CA801046
EST:     GAGCTTGCAGTTGATCCCCCGTATAAAGCCGGGGACCCAATTGGTGTGTG                         GTGGTG-CCCTCAACCCAACTCCAAGTTGGTTATAAACTATGGTTTTGTT
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTG-TGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTT
EST: gi|20814963|gb|BQ299441.1|BQ299441
EST:     GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTG                         GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA
genomic: GAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacg ... tcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgtttctttattacgagcttcattataagatttacagttggtcattgtcagGTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG
                      ttcattataagattta  TA-rich tract