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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggatatttttccatgcctctttggtttttacatatatatctaaattttaccacttgtgctcataatagaacttcggcttcatttgttctacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCA

Basic information

species Glycine max
transcript GLYMA19G21400.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G21400.3 (Glycine max), 3'ss of exon 5
lower sequence: AT5G05080.2 (Arabidopsis thaliana), 3'ss of exon 6
atggatatttttccatgcctctttggtttttacatatatatctaaattttaccacttgt-----gctcataatagaacttcggcttcatttgttctacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCA
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---------gtgagctatctactttggtttcaaatgt-tgtcaaaccttctctactttttcgttgctaaaagatgaaatgcttatatactattactgta-tgcagGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019402|gb|CX706144.1|CX706144
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|58019541|gb|CX706283.1|CX706283
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|209727942|gb|BW663456.1|BW663456
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|22931116|gb|BU548255.1|BU548255
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|58015211|gb|CX701953.1|CX701953
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|213611080|gb|DB974982.1|DB974982
EST:     CTGGGAAACTGCTGCTTGAAAATTTA-GAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACAGTAGC
genomic: CTGGGAAACTGCTGCTTGAAAA-TTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
EST: gi|58021744|gb|CX708485.1|CX708485
EST:     GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAG                         ACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC
genomic: GCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGgtgagttagc ... tacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttaccacttgtgctcataatagaacttcggcttcatttgttctacgctgcagACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCA
                                      tttgttct  CT-rich tract
 ataatagaa  TA-rich tract