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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTG

Basic information

species Glycine max
transcript GLYMA19G05360.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335212|gb|CO979078.1|CO979078
EST:     CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAG                         GGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
genomic: CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg ... atcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
EST: gi|18040193|gb|BM308487.1|BM308487
EST:     CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAG                         GGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
genomic: CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg ... atcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatttattggttagagatatggatctataatgatgactttcttatcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTG
                                      ctttcttatcattcc  CT-rich tract
                        atctataat  TA-rich tract