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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatgtttagaggttcattttctgcggtaaagctgacagttttgttgaataagcaggtcctgatatagGCCACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAAT

Basic information

species Glycine max
transcript GLYMA19G04970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G04970.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G344967_T01 (Zea mays), 3'ss of exon 9
-----------------------------gttatgttta-gaggttcat-----tttctgcggtaaagctgacagttttgttgaataagcaggtcctgatatagGCCACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAAT
                             | | || | | || ||| ||     |||   | |||  |       ||   ||  |    |||    || ||| || ||||||||||| || |||||  | ||||||||||||||| ||||||||||  | ||  | ||||| |  |||||| | ||||||||            
gtaatctggcactggcaatattttcgaaggctttggtgacgatgtttatccaagttttgtctgtatggtaagtgcttactttttaatttcagTATTTGGTATTGGGCACTATATTCCTAAGGTGAAGTCAGCAATTGAGTCAATACTAAGGTCTTGCAACAAGGCATATAGCCTGGCACTTCTCACATCATC------------

upper sequence: GLYMA19G04970.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G15680.1 (Arabidopsis thaliana), 3'ss of exon 11
----------------------------gttatgtttagaggttcattttctgcggtaaagctgacagtttt----gttgaataagcaggtcctgatatagGCCACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAAT
                              || || |  |    | ||| ||    || |  | ||  || |    ||| | | |  ||||| ||  |||||||| || || ||||| |||||||| |||||||||||||| ||||| || || || |  || || |||||||| ||| | ||||||||            
gtaacccgttaacctgaattaggttgttagtaggtctcaataagcttttcctttcatacacttaacttttcttagtgttcacttaatagGTCATGGGATAGGCCATTACATACCAAAGGTGAAAGCAGCAATTGAGTCAATTTTAAGATCCTGCCACAGGACCTACAGTCAAGCTCTTCTAACATCATC------------

upper sequence: GLYMA19G04970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 10
-------------------------------------------gttatgtttagaggttcattttctgcggtaaagctgac-----agttttgttgaataagcaggtcctgatatagGCCACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAAT
                                           | |     |     |      | ||||    | ||        ||||||||||  |  ||||||| |||||| || ||||| |||||||||||||| ||||||||||| || ||  |||| ||||| |||| ||| |||||||| || ||| | || || ||            
gtgggttgattactggttttgcaatactgatgtttgatcttcggcttgaccttactatctgaactttgcgactgaactccattttaagttttgttgctttcgcagGTCTTGATATTGGTCACTACATTCCAAAAGTGAAGGCTGCAATTGATTCGATTATAAGATCTTGCCATAGAACCTATAGTCAGGCTCTTCTTACTTCGTC------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattttctgcggtaaagctgacagttttgttgaataagcaggtcctgatatagGCCACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAAT
                                            tcctgat  putative branch site (score: 3)
                               ttgaataa  TA-rich tract