1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaactcaaacccacgacctctccctccccccttctgcctttaaccaccaagccgaccttatagcccttagaaaatataataattttacttcattttcagGATCCAAGAGCTCCTTCAAGGAAGAAAGGAGCACCATTTGTAGCACAGCAAATGCAAAGGCCTCCTCCTACTACAAAGTCAGTCAGGCCTCCTTTGATTC
species | Glycine max |
transcript | GLYMA19G01410.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGCATTGCTGCAGTGGAGGGTGAGGGCTATGTTTTCTTCTCCAGAT GATCCAAGAGCTCCTTCAAGGAAGAAAGGAGCACCATTTGTAGCACAGCAA
genomic: TGTTGGCATTGCTGCAGTGGAGGGTGAGGGCTATGTTTTCTTCTCCAGATgtgagtaaca ... tcattttcagGATCCAAGAGCTCCTTCAAGGAAGAAAGGAGCACCATTTGTAGCACAGCAA
caccaagccgaccttatagcccttagaaaatataataattttacttcattttcagGATCCAAGAGCTCCTTCAAGGAAGAAAGGAGCACCATTTGTAGCACAGCAAATGCAAAGGCCTCCTCCTACTACAAAGTCAGTCAGGCCTCCTTTGATTC
ttttacttcattttc CT-rich tract
ttagaaaatataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaactcaaacccacgacctctccctccccccttctgcctttaaccaccaagccgaccttatagcccttagaaaatataataattttacttcattttcagGATCCAAGAGCTCCTTCAAGGAAGAAAGGAGCACCATTTGTAGCACAGCAAATGCAAAGGCCTCCTCCTACTACAAAGTCAGTCAGGCCTCCTTTGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - -tcaaacc
- - - - - - - - -cctctcc
- - - - - - - - - - - - ctccccc
- - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - -ccaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatataa