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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagaatctattctttgcattgctgttctttaagcatgataatcttttttttttcttgcttttatttactccttttatgttgtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCG

Basic information

species Glycine max
transcript GLYMA19G01260.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G01260.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os08g29370.1 (Oryza sativa), 3'ss of exon 6
gtgaggagaatctattctttgcattgctgttctttaagcat--gataatcttttttttttcttgcttttatttactcc---ttttatgttgtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCG
|| || |  ||        | || ||   |   | ||||||  |   || |     |  |   || |||  | ||        ||    | |      |||||||||| ||||| ||||| |||||||| || |||||| | || ||||| ||||||||||| || || |||||||||||| ||||||| || |||||||
gtaagtatcatgatactgcttcagtgtaatgtatcaagcatctgcagatatgggcatgcttcagcattttctaacattaaacgtttgaatatcatggcagGAATTTGATGACAATTCTGCTTCTAGCCAAATCTTTTGGTTGTTAAAAGAGAGTGAGCTAACACCAAGCAATGCCAATATACTGGATGGGCGGTATGCCG

upper sequence: GLYMA19G01260.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G015967_T01 (Zea mays), 3'ss of exon 6
gtgaggagaatctattct-ttgcat-tgctgttctttaagcatgataatcttttttttttct-tgcttttatttactccttttatgttgtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCG
|| ||    |  |      |||||  |       | |    | |||   | |  | | |  | |  | | |  |        |    ||  |||  |||||||||| ||||| ||||| ||||||||  |||||||||| |||||||| ||||||||||| || || ||||||||||||||||| || || || || |
gtaagagagacatgcaagattgcacatatcagcatatgcagacgatctgcatcgtatctaatgtattctaacctgagataacttcactgcatga-cagGAATTTGATGACAATTCTGCTTCTAGCCAAGTATTTTGGCTCTTGAAAGAGAGTGAGCTAACACCAAGCAATGCCAATATATTGGACGGGCGGTACGCAG

upper sequence: GLYMA19G01260.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0066g01410.t01 (Vitis vinifera), 3'ss of exon 6
gtgaggagaatctattctttgcattgctgttctttaagcatgataatcttttttttttcttgcttttatttactccttttatgttgtttgaat---------agGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCG
|| || |   |  |||| |  ||| ||| || | ||   |||   ||    ||  |  ||   |  |||||  || |||| |||| ||| | |         |||||||||| || || || || || |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| || ||||| |
gtaagaactcta-attcataccatggctatt-tctacatatgtgtatggacttgatggctaaatgatatttgttctttttttgttttttcattttactctgcagGAATTTGACGATAATTCCGCGTCAAGCCAGATATTTTGGCTACTGAAAGAAAGTGAACTGACTCCTAGTAATGCCAATATATTGGATGGCCGTTATGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589721|gb|BI674337.1|BI674337
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|209701975|gb|BW661361.1|BW661361
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|13480110|gb|BG509453.1|BG509453
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|31474078|gb|CD416106.1|CD416106
EST:     AAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|31463367|gb|CD405395.1|CD405395
EST:     AAACTAAGCTTCCGTTTAATGCTTTCGGTACCATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|20208026|gb|BQ134115.1|BQ134115
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|27424039|gb|CA935559.1|CA935559
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|31309102|gb|CD394305.1|CD394305
EST:     TGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: TGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|213596546|gb|DB974022.1|DB974022
EST:     AAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAA-TTGAAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGA
genomic: AAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTG-AGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGA
EST: gi|209726777|gb|BW672491.1|BW672491
EST:     AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA
EST: gi|20812710|gb|BQ297188.1|BQ297188
EST:     AAACAAAGCTTCCCTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGAT                         GAATTTGAGGACAACTCTGCCTCCAGCCAGATATTTTGGCTATTGAAAGAA
genomic: AAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATgtgaggagaa ... gtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataatcttttttttttcttgcttttatttactccttttatgttgtttgaatagGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCG
     atcttttttttttctt  TA-rich tract