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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatgtctgctactgctatacttgggtgcactgttttattttccccgcttgtttcattctcatgccatttttcttgttactatatcagCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCA

Basic information

species Glycine max
transcript GLYMA19G00260.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328463|gb|FK023509.1|FK023509
EST:     TGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAG                         CATGTTGAAGTATTGCCA
genomic: TGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGgtttgatgtc ... actatatcagCATGTTGAAGTATTGCCA
EST: gi|4260267|gb|AI416763.1|AI416763
EST:     TGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAG                         CATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATT
genomic: TGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGgtttgatgtc ... actatatcagCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattttccccgcttgtttcattctcatgccatttttcttgttactatatcagCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCA
                                  tttttcttgttact  CT-rich tract
                                 atttttctt  TA-rich tract