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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtgctttaacttcatttccttttattgtgtatatagaagaactatcttgtaaagtttcttcccctcccagaaagacaattttagtttgctatgacattcctacttgtggcttatgtattgctacccttctatgcagttgttggcacacttttttatatcaagttgacaaaattaagaatgactgagttgaataatttcaGGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA

Basic information

species Glycine max
transcript GLYMA18G52130.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52130.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 3'ss of exon 6
ggtgctttaacttcatttccttttattgtgtatatagaagaactatcttgtaaagtttcttcccctcccagaaagacaattttagtttgctatgacattcctacttgtggcttatgtattgctacccttctatgcagttgttggcacacttttttatatcaagttgacaaaa---ttaagaatgactgagttgaataatttcaGGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA-
                                                                                                           ||  |||||  || ||    || | |  |  | |      | |||||||   | | |||  |||    || | |   |  ||  ||     |||||||| ||  ||||||||||||||||||||||| || | |||| ||| ||||| ||||| |||||||||||||| || ||||  || ||||||||||||| 
-------------------------------------------------------------------------------------------------------tggatgaattatgagtt-cttttttttttttaatatatatatgtaattttttaatcccaattgtgaaatgatttcatatcaatggaagtggtacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300837|gb|FG989734.1|FG989734
EST:     TTCCAAAGGGCTGGAGAACTCAATGTGCCAGTGGGCTACATGTGTATGAA                         GGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCC
genomic: TTCCAAAGGGCTGGAGAACTCAATGTGCCAGTGGGCTTCATGTGTATGAAggtgctttaa ... aataatttcaGGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCC
EST: gi|209711038|gb|BW681348.1|BW681348
EST:     TTCCAAAGGGCTGGAGAACTCAATGTGCCAGTGGGCTTCATGTGTATGAA                         GGGGCTTGATCTGCATATTTCTGAAATTGAG
genomic: TTCCAAAGGGCTGGAGAACTCAATGTGCCAGTGGGCTTCATGTGTATGAAggtgctttaa ... aataatttcaGGGGCTTGATCTGCATATTTCTGAAATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacttttttatatcaagttgacaaaattaagaatgactgagttgaataatttcaGGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA
                agttgac  putative branch site (score: 4)
     tttttatatcaagtt  TA-rich tract