1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattattctgcatattgtcgatataaataatcaatcttagtcattttacattaaggtcctctgctgatgacatgattcatgtctaactacttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTC
species | Glycine max |
transcript | GLYMA18G50900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAGTGAAG CTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTEST: gi|8401582|gb|BE057146.1|BE057146
genomic: GAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGgtaattttat ... ttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGT
EST: GAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAG CTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTEST: gi|208175625|gb|GD979862.1|GD979862
genomic: GAGCAGATGTTAGTAGAAGCAAACAGATCCTTGACAGTGAAGgtaattttat ... ttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGT
EST: CAGATCCTTGACAGTGAAG CTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGT
genomic: CAGATCCTTGACAGTGAAGgtaattttat ... ttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGG-
ttacattaaggtcctctgctgatgacatgattcatgtctaactacttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTC
gtctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattattctgcatattgtcgatataaataatcaatcttagtcattttacattaaggtcctctgctgatgacatgattcatgtctaactacttgttgtcagCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTGGTCCAGAGAATTCTCACTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - tgcatat
- - - - - - - - - - - ataaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc