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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtatagcaattttaacctcttttttagaacgcataaacccacttatacatttaagttagtgtataattctactaacactgttggttttaatgtttcaGCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTAACAAGACCAACCATCTGGAAATAATTCAGGCATTAGATTGTTGTCAATT

Basic information

species Glycine max
transcript GLYMA18G50490.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346651|gb|BI972246.1|BI972246
EST:     ACTCTCAATGGAAAGCTACTATGTGGATGTGATGATGTTCATACATGCGT                         GCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTA
genomic: ACTCTCAATGGAAAGCTACTATGTGGATGTGATGATGTTCATACATGCGTggtatagcaa ... taatgtttcaGCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTA
EST: gi|51344273|gb|CO985006.1|CO985006
EST:     ACTCTCAATGGAAAGCTACTATGTGGATGTGATGATGTTCATACATGCGT                         GCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTA
genomic: ACTCTCAATGGAAAGCTACTATGTGGATGTGATGATGTTCATACATGCGTggtatagcaa ... taatgtttcaGCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatacatttaagttagtgtataattctactaacactgttggttttaatgtttcaGCCTGGATCAACATCAGAAGCTTGCTCTCAATCATAGGAAAAATCATAGTAACAAGACCAACCATCTGGAAATAATTCAGGCATTAGATTGTTGTCAATT
                   tataattctactaa  TA-rich tract