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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctctttttgttcatacgcattggggattatgaagtgtgtgttacttgatatattataatcagtctaaatggtaaaccaaatcatatcatggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG

Basic information

species Glycine max
transcript GLYMA18G49770.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 3'ss of exon 6
-gctctttttgttcatacgcattggggattatgaagtgtgtgttact-tgatatattataatcagtc-taaatggtaaaccaaatcatatcatggttt--tgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG
 | || |||      |||  |      ||| ||   | ||| ||| | | |||   | | | |||    |     | ||   | ||||  | |    |  || |||||||||||||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||| | |||||  |||||||||| 
ggttcctttaagggttacatac-----attttgttctttgtattattattatactctgtgaacagctgcatgaaattaattcactcattgctttacctcatgcagATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731437|gb|BU763843.1|BU763843
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|14259831|gb|BG882739.1|BG882739
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|193414561|gb|FK379283.1|FK379283
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAA-TGGTGAAAA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAA
EST: gi|207718492|gb|GD700064.1|GD700064
EST:     ATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: ATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|208161964|gb|GD962751.1|GD962751
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGA
EST: gi|208263578|gb|GE063376.1|GE063376
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAA
EST: gi|151395613|gb|EV265490.1|EV265490
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGAACCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatatattataatcagtctaaatggtaaaccaaatcatatcatggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG
                 gtctaaa  putative branch site (score: 3)
     atattataatcagt  TA-rich tract