Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgctgtttatgcatgacttcaatcatattattgtgtaggctgttactggctggtgaacaatcaatagcttgctaagtatgtcttaaatggttttcaggTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAG

Basic information

species Glycine max
transcript GLYMA18G48380.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984729|gb|BE658837.1|BE658837
EST:     TGTTCAGAATGAGAANGCATTCTNNNTTGATCCCCATGATGTTCAGCAGG                         TTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACC
genomic: TGTTCAGAATGAGAAGGCATTCTACCTTGATCCCCATGATGTTCAGCAGGtacgagtgta ... ggttttcaggTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACC
EST: gi|6228207|gb|AW156806.1|AW156806
EST:     TGTTCAGAATGAGAAGGCATTCTACCTTGATCCCCATGATGTTCAGCAGG                         TTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACC
genomic: TGTTCAGAATGAGAAGGCATTCTACCTTGATCCCCATGATGTTCAGCAGGtacgagtgta ... ggttttcaggTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactggctggtgaacaatcaatagcttgctaagtatgtcttaaatggttttcaggTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAG
                                               ttttc  CT-rich tract
               aatcaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttgctgtttatgcatgacttcaatcatattattgtgtaggctgttactggctggtgaacaatcaatagcttgctaagtatgtcttaaatggttttcaggTTGTTAATATCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAG

- tgctgtt
- - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - aggctgt
- - - - - - - - - - - - - - - - - - - - - - - - tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgct