1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattaaatggtggtttctaaattgtttgttttttcctacttaaaattccctgaactaattttcatctaatttatatcttcatcaattggaaaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGGTAGTGCTCAACA
species | Glycine max |
transcript | GLYMA18G48080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGCTCAAACATATCGAGAATCAGAAATGAGTCTGGAGCAATGATTAA GGTTTATGGTGGTAAGGGTGAACAGAAGCACAGACAAATTCAATTTGGTGGEST: gi|15200230|gb|BI424241.1|BI424241
genomic: GTGGCTCAAACATCTCGAGGATCAGAAATGAGTCTGGAGCAATGATTAAggttagtctt ... aaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGG
EST: TGTGGCTCAAACATCTCGAGGATCAGAAATGAGTCTGGAGCAATGATTAA GGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGGEST: gi|51337394|gb|CO981260.1|CO981260
genomic: TGTGGCTCAAACATCTCGAGGATCAGAAATGAGTCTGGAGCAATGATTAAggttagtctt ... aaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGG
EST: TGTGGCTCAAACATCTCGAGGATCAGAAATGAGTCTGGAGCAATGATTAA GGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGG
genomic: TGTGGCTCAAACATCTCGAGGATCAGAAATGAGTCTGGAGCAATGATTAAggttagtctt ... aaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGG
ttccctgaactaattttcatctaatttatatcttcatcaattggaaaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGGTAGTGCTCAACA
aactaattttcatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaaatggtggtttctaaattgtttgttttttcctacttaaaattccctgaactaattttcatctaatttatatcttcatcaattggaaaatgttgcaGGTTTATGGTGGTAAGGGTGAACAGAAGCATAGACAAATTCAATTTGGTGGTAGTGCTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - -tggtggt
- - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - -ccctgaa