1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatagttgtagctatatataagttgataatttagtatgtaaaatttctgcaagctgattggtttatctctccgtttcctcctattgacacaaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAAA
species | Glycine max |
transcript | GLYMA18G47240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAG CTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCGEST: gi|26058460|gb|CA801374.1|CA801374
genomic: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctct ... aaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
EST: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAG CTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
genomic: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctct ... aaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
tctgcaagctgattggtttatctctccgtttcctcctattgacacaaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAAA
tattgac putative branch site (score: 2)
acaaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagttgtagctatatataagttgataatttagtatgtaaaatttctgcaagctgattggtttatctctccgtttcctcctattgacacaaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCGTTACTCGTTGGCTTGAATAGAGTGATTGTAGGTCTGTAATACTCAAAAA
- - - - - - - - - - - - - - - - - - - - - - - -tgcaagc