1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgtccctttggcatactggcatgacagattttttattggtcctaggtcccatcttcttgtatacaactctaattcaatgttttttttatcttatggcaGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGA
species | Glycine max |
transcript | GLYMA18G46510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCCGACCAAAGNATGAAGAGGA GAAAATGAAAGCATTCATCAATTTAGTATTTCCAAATACAATTGTTTCTGTEST: gi|192329680|gb|FK023268.1|FK023268
genomic: CCCGACCAAAG-ATGAAGAGGAggttagtaga ... tcttatggcaGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGT
EST: GATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGA GAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGT
genomic: GATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAggttagtaga ... tcttatggcaGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGT
aggtcccatcttcttgtatacaactctaattcaatgttttttttatcttatggcaGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGA
ctctaat putative branch site (score: 3)
tgttttttttatctt putative PPT
tctaattcaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtccctttggcatactggcatgacagattttttattggtcctaggtcccatcttcttgtatacaactctaattcaatgttttttttatcttatggcaGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- tgtccct
- - - - - - gcatact
- - - - - - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt