1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttggtaacataaagaacaaacaaatgcctctttactgatacaaaatgttatgtgcataaacaatgagctcaccctgatagcttcacaccttcattgcagaTGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTC
species | Glycine max |
transcript | GLYMA18G45990.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGCCAGCATTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGA TGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAG
genomic: TGGCCAGCATTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGGtatgctcatt ... tcattgcagaTGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAG
tgttatgtgcataaacaatgagctcaccctgatagcttcacaccttcattgcagaTGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTC
ccttcatt CT-rich tract
ataaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtaacataaagaacaaacaaatgcctctttactgatacaaaatgttatgtgcataaacaatgagctcaccctgatagcttcacaccttcattgcagaTGTACTCTTGTTGATTTGATGGTGGAAATTGATCGAATGTTGCGTCCTGAGGGAACTGTGGTGGTAAGGGATGCCCCTGAAGTAATTGACAGAGTAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - ataaagaa
- - - - - - - - -aaacaaa
- - - - - - - - - - - - tgcctct
- - - - - - - - - - - - - - - - - ctgatac
- - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacacc