1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatactaagctaataatatatttattttaattctgtgcttctcatcacatcattattgaacaagtttagaatcttgaagttatgttgctatggtatcaggTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACC
species | Glycine max |
transcript | GLYMA18G45240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGG TTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGEST: gi|14991270|gb|BI316943.1|BI316943
genomic: TGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGtttgtgcata ... tggtatcaggTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAG
EST: TGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGG TTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAG
genomic: TGCTTCAAAATGGCATTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGtttgtgcata ... tggtatcaggTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAG
cacatcattattgaacaagtttagaatcttgaagttatgttgctatggtatcaggTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACC
attattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatactaagctaataatatatttattttaattctgtgcttctcatcacatcattattgaacaagtttagaatcttgaagttatgttgctatggtatcaggTTTTTGGGATGGACAAGGGATACTGGTTCATCCCTGCTTATTCAGAAGAAGATATACGAAGGATGCCCGTACTTCAGGGCCTTGAGTATCCAACGACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - - - - - - - -cacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct