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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taaggctttatattgaatatttatcaaaattaatttaatttccatcccaagaaaattaaaattagtttcaaacatttgatattttctcattcttgttttctttttcccaggGATCATCTTATTTCACTGCCTTGATCAGG

Basic information

species Glycine max
transcript GLYMA18G44590.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566569|gb|AW234212.1|AW234212
EST:     TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG                         GATCATCTTATTTCACTGCCTTGATCAGT
genomic: TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGtaaggcttta ... ttttcccaggGATCATCTTATTTCACTGCCTTGATCAGG
EST: gi|7284786|gb|AW597211.1|AW597211
EST:     TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG                         GATCATCTTATTTCACTGCCTTGATCAGT
genomic: TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGtaaggcttta ... ttttcccaggGATCATCTTATTTCACTGCCTTGATCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaattagtttcaaacatttgatattttctcattcttgttttctttttcccaggGATCATCTTATTTCACTGCCTTGATCAGG
                 atttgat  putative branch site (score: 5)
                  tttgatattttctcat  CT-rich tract
             aaacatttgatatttt  TA-rich tract