1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agccattttaagttgtgtttctgctttcctggcttctttctacataataaatgtttaaggaatgattagcatgtgttgaacttgtttgttcttgttggtaGTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCC
species | Glycine max |
transcript | GLYMA18G44460.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCATTCGACTGGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAG TTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAEST: gi|9440109|gb|BE440620.1|BE440620
genomic: TTCCCCATTCGACTGGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGtgtaagtgtg ... cttgttggtaGTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAA
EST: TTCCCCATTCGACTGGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAG TTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAA
genomic: TTCCCCATTCGACTGGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGtgtaagtgtg ... cttgttggtaGTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAA
aataaatgtttaaggaatgattagcatgtgttgaacttgtttgttcttgttggtaGTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCC
tttgttctt CT-rich tract
atgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccattttaagttgtgtttctgctttcctggcttctttctacataataaatgtttaaggaatgattagcatgtgttgaacttgtttgttcttgttggtaGTATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCC
agccatt
- - - - - agttgtg
- - - - - - - - - ttctgct
- - - - - - - - - - - - - - -tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtg