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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tttgtgcttctcttatcacttaaaatagttgttctcttcctcctataaactatgtaattaagaaccaactcttacttcatgtaggCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGTTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGCA

Basic information

species Glycine max
transcript GLYMA18G44350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311810|gb|BG405461.1|BG405461
EST:     AAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGG                         CACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCA
genomic: AAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGtttgtgcttc ... ttcatgtaggCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCA
EST: gi|15663285|gb|BI700656.1|BI700656
EST:     AAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGG                         CACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCA
genomic: AAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGtttgtgcttc ... ttcatgtaggCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctcttcctcctataaactatgtaattaagaaccaactcttacttcatgtaggCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGTTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGCA
                                      ctcttac  putative branch site (score: 3)
                                      ctcttacttc  CT-rich tract
             tataaactatgtaatt  TA-rich tract