1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtctattttgtatgaacttgttaaacaaggaactatgttgtcaatggatatcatttcatttatcacatctaattttggttatggaatgtaatgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACA
species | Glycine max |
transcript | GLYMA18G42220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGA TGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGEST: gi|151412188|gb|EV282000.1|EV282000
genomic: TCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGAtgtatggttg ... atgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGG
EST: TCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGA TGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGG
genomic: TCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGAtgtatggttg ... atgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGG
ggatatcatttcatttatcacatctaattttggttatggaatgtaatgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACA
atctaat putative branch site (score: 3)
tgtttttc putative PPT
aatgtaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctattttgtatgaacttgttaaacaaggaactatgttgtcaatggatatcatttcatttatcacatctaattttggttatggaatgtaatgtttttcaGGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACA
- - - - - tatgaac
- - - - - - - - - - -taaacaag
- - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgta