1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaggtgcataagttgatcttaacttatggaaaagctcaacgtattttagtttctgctcaactcttagatttggtgccccttcatttaattggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAACCAGAGGGAGCTGGTTCAGCAACAAAGGACTTGAAGGCTTTATTTTCCC
species | Glycine max |
transcript | GLYMA18G39930.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAAEST: gi|58019799|gb|CX706541.1|CX706541
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|193716729|gb|FK654287.1|FK654287
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|207791005|gb|GD761400.1|GD761400
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: TTGAAGCCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|208335948|gb|GE133809.1|GE133809
genomic: -TGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|208298616|gb|GE089799.1|GE089799
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|213591769|gb|DB975654.1|DB975654
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|214006979|gb|DB988430.1|DB988430
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|208098334|gb|GD894755.1|GD894755
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAAGTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTTTGAGGAGGCTEST: gi|208194340|gb|GD987623.1|GD987623
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCT
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|6915274|gb|AW396804.1|AW396804
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|208279633|gb|GE081260.1|GE081260
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTAEST: gi|207691018|gb|GD671164.1|GD671164
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTCGACTTGGCGTCAAAAEST: gi|193560744|gb|FK521059.1|FK521059
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAAATTCAAGGCATTTGACTTGGCGTCAAAEST: gi|58022869|gb|CX709610.1|CX709610
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCT-AAATTCAAGGCATTTGACTTGGCGTCAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|58016336|gb|CX703078.1|CX703078
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|193477638|gb|FK442269.1|FK442269
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|8825861|gb|BE209591.1|BE209591
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAC GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|193684321|gb|FK621849.1|FK621849
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|207719861|gb|GD703046.1|GD703046
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: TCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|58019388|gb|CX706130.1|CX706130
genomic: TCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAG GCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAAEST: gi|7028397|gb|AW458180.1|AW458180
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAA
EST: CTGACACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAA GCACTAAATTATGAGGAGGCTAAATTC
genomic: CTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGgtatcttatt ... ggtttaacagGCACTAAATTATGAGGAGGCTAAATTC
ttagtttctgctcaactcttagatttggtgccccttcatttaattggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAACCAGAGGGAGCTGGTTCAGCAACAAAGGACTTGAAGGCTTTATTTTCCC
atttaat putative branch site (score: 4)
atttaattggtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtgcataagttgatcttaacttatggaaaagctcaacgtattttagtttctgctcaactcttagatttggtgccccttcatttaattggtttaacagGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAACCAGAGGGAGCTGGTTCAGCAACAAAGGACTTGAAGGCTTTATTTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG