Sequence
atgc intronic sequence ATGC exonic sequence...attcctattctaaaagaaaaacttgaagtctcctcctttgtcctctatcaacagttgactttcttgatattctaataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA
Basic information
species | Glycine max |
transcript | GLYMA18G25560.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G25560.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G02250.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------------------------------------------------attcctattctaaaagaaaaacttgaagtctcctcctttgtcctctatcaac--agttgactttc--ttgatattcta-ataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA
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gtaagtcaaccttatatttcttctgtggtaatatctcttcagttttttctatgtgattgcgaagcgacatctctgaaagaatattctcttcgaatgtcttgtgatcgttttttcactgtttggttattgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATATTAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTA
upper sequence: GLYMA18G25560.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g00460.t01 (Vitis vinifera), 3'ss of exon 6
attcctattctaaaagaaaaacttgaagtctcctcctt-tgtcctctatcaacagttgactttcttgatattctaataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA
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gaaatgaccttatgatgatagttgcatgatccttgtgtgtgtgtccaactgcttaatcagtttgttact-ttctatataatatatattttcttcttatcagATTCTTAGGGCAATGGGACTGGTCAAAACAGCATCTTCAGCATTAAATCTCCTCATAGATGTTGGGTATTTTCCTGTACATGTCAATCTCGATCTGTTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcaacagttgactttcttgatattctaataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA
tcttctgtt CT-rich tract
tttcttgatattctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcctattctaaaagaaaaacttgaagtctcctcctttgtcctctatcaacagttgactttcttgatattctaataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA
- - - - - - -aagaaaa
- - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttctg