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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagctgtctgcttctttgttaagatgatttgatttcaaataatgcgttttgttgactgatacttgtcaacttacagTTTGGAAGGCGATGGTTCAAACCTCAAGAGGCGTCCAATTTGAGAGTGAAAATCCTTAAATTGCTTTTAGAAAAATTACAGAATTCAATAACGGATAATT

Basic information

species Glycine max
transcript GLYMA18G18950.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692889|gb|AW760988.1|AW760988
EST:     GTTTCATGGAGGAGGCACCTGAATGACTGAAAAGGAAAGATTTAGATATG                         TTTGGAAGGCGATGGTTCAAACCTCAAGAGGCGTCCAATTTGAGAGTGAAA
genomic: GTTTCATGGAGGAGGCACCTGAAAGACTGAAAAGGAAAGATTTAGATATGgtaatagctg ... caacttacagTTTGGAAGGCGATGGTTCAAACCTCAAGAGGCGTCCAATTTGAGAGTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgatttgatttcaaataatgcgttttgttgactgatacttgtcaacttacagTTTGGAAGGCGATGGTTCAAACCTCAAGAGGCGTCCAATTTGAGAGTGAAAATCCTTAAATTGCTTTTAGAAAAATTACAGAATTCAATAACGGATAATT
                                gactgat  putative branch site (score: 3)
     atttgatttcaaataa  TA-rich tract