1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtctgttcttattttgaaatatcgtatgtgatatgttgaatatatagaatactcgtttttgtcatgtgtgggtttgcttaccaaaatggtacatctgcagGTTGCCAGAATACTTCTGTTCATTTACATGTTTTACCATGTCTACTTGCACTTTGATAAG
species | Glycine max |
transcript | GLYMA18G14050.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
agaatactcgtttttgtcatgtgtgggtttgcttaccaaaatggtacatctgcagGTTGCCAGAATACTTCTGTTCATTTACATGTTTTACCATGTCTACTTGCACTTTGATAAG
tgcttac putative branch site (score: 2)
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttcttattttgaaatatcgtatgtgatatgttgaatatatagaatactcgtttttgtcatgtgtgggtttgcttaccaaaatggtacatctgcagGTTGCCAGAATACTTCTGTTCATTTACATGTTTTACCATGTCTACTTGCACTTTGATAAG
gtctgtt
- - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttacc