1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtaagtttcctaaacaatattggtgaaattcctatgaataagcacattctacttttatgaatcaagggttgacttatatccatgctcataattctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG
species | Glycine max |
transcript | GLYMA18G07540.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGG TGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTEST: gi|6482105|gb|AW201376.1|AW201376
genomic: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGtaggtgctac ... attctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCT
EST: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGG TGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTEST: gi|17022032|gb|BM093066.1|BM093066
genomic: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGtaggtgctac ... attctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCT
EST: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGG TGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCT
genomic: CTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGATGTGGtaggtgctac ... attctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCT
attctacttttatgaatcaagggttgacttatatccatgctcataattctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG
ggttgac putative branch site (score: 4)
ttctcc putative PPT
ttttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcctaaacaatattggtgaaattcctatgaataagcacattctacttttatgaatcaagggttgacttatatccatgctcataattctccaggTGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG
- - - - -ctaaaca
- - - - - - - - - attggtg
- - - - - - - - - - - - - - - cctatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgctc