Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaaatatgttgttcagagtttgatttcatcatctcatgtactttagttaacattgacttattactttaattacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCATTGTTCTTCGGGTGGTT

Basic information

species Glycine max
transcript GLYMA18G05520.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05520.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 6
ggtaaatatgttgttcagagtttgatttcatcatctcatgtactttagttaacattgacttattactttaattacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCATTGTTCTTCGGGTGGTT-
 |||||            ||||   |||||  || | ||    |   || |||| ||| | |||  | ||| ||| | | ||||||||||||| |||||| ||| ||||| || || || ||| |||| |||||||| ||| ||||||| |||||||| 
-gtaaagtcagcaccacaagttc--tttca--atgtaattggtt---gtcaacagtgagtgatt-ttgtaaatacttctgcagGCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701169|gb|BW652202.1|BW652202
EST:     ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGAT                         GGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
genomic: ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATggtaaatatg ... tacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
EST: gi|26045687|gb|CA783193.1|CA783193
EST:     ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGAT                         GGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
genomic: ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATggtaaatatg ... tacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
EST: gi|151412353|gb|EV282165.1|EV282165
EST:     ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGAT                         GGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
genomic: ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATggtaaatatg ... tacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
EST: gi|13791097|gb|BG653688.1|BG653688
EST:     ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGAT                         GGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG
genomic: ACTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATggtaaatatg ... tacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcatctcatgtactttagttaacattgacttattactttaattacatattcaGGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCATTGTTCTTCGGGTGGTT
                          attgacttattacttt  TA-rich tract