Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgtcatcaataatatcagctttacccacagtagacagcaaaactggcttgctgataatgtttatgctgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAGGTACATTATTTCTTTCCTTCCCCCTCTAGTCACAAA

Basic information

species Glycine max
transcript GLYMA18G04250.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04250.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g01670.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------------------------------gtatgatgtcatcaataatatcagctttacccacagtagacagcaaaactggcttgctgataatgtttatgctgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAGGTACATTATTTCTTTCCTTCCCCCTCTAGTCACAAA
                                                                         ||   ||   ||||| |       ||||      || |   |   |  |||  | |  | ||| ||| |||| ||||||||||||||||||||  |||| |||||||| |||||| | ||| | ||||||||||| || |||                                    
gtttgatgattgcctccatcacatctttcattgttatatctctgactcgtttcccccacctcacacacaacattactttgggttcaatgaagaggattttattttttgttggttg-gcatttggagttcccacaatctttctgctctgcagGTGGCGTGATGTTAAACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAG------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996262|gb|BM085634.1|BM085634
EST:     ACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAG                         GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
genomic: ACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatgatgtc ... tgctgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttacccacagtagacagcaaaactggcttgctgataatgtttatgctgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAGGTACATTATTTCTTTCCTTCCCCCTCTAGTCACAAA
                              tgctgat  putative branch site (score: 3)
                                   ataatgtttat  TA-rich tract