1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggtttgtagttcttttcagtttttgatgtaaattcatactttgctacccatgaagaaaatgaattctgatagttaatttagctttagtctcttcagatgtgtcataatatattcatatacagatttttctttccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCTCTATGACGGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATACAAGG
species | Glycine max |
transcript | GLYMA18G04160.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCEST: gi|208293168|gb|GE096404.1|GE096404
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: TCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCEST: gi|21255789|gb|BQ452677.1|BQ452677
genomic: TCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCEST: gi|151407599|gb|EV277414.1|EV277414
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCEST: gi|58016501|gb|CX703243.1|CX703243
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
EST: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTA GATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
genomic: AGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAggtttgtagt ... tccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCC
gtctcttcagatgtgtcataatatattcatatacagatttttctttccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCTCTATGACGGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATACAAGG
tttttctttccaattt CT-rich tract
ataatatattcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttgtagttcttttcagtttttgatgtaaattcatactttgctacccatgaagaaaatgaattctgatagttaatttagctttagtctcttcagatgtgtcataatatattcatatacagatttttctttccaatttcaGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCTCTATGACGGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA