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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtttttgtcttatttactttcttgttataaatttgcatttaggaattttcctatgagaatcttcaatcttcaatatattgagttttgcagATTTGCAGCAGCATTGATTAATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGCCCAAACACCTTGCCTGTTATATATGACCGTGGA

Basic information

species Glycine max
transcript GLYMA18G03890.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 6
---------gtattgtttttgtcttatttactttcttgttataaatttgcatttaggaattttcctatgagaatcttcaatcttcaatatattgagttttgcagATTTGCAGCAGCATTGATTAATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGCCCAAACACCTTGCCTGTTATATATGACCGTGGA
           |     |   |   | ||| |||||  ||      |   || |      | |  |  |  |    ||| | | |    || |   || ||||| |||||||| |||||||||||||  || |||||  ||||||| |||||||| |||||||||||||  ||||||||  ||||||| || |||||||| |||
ttctcacaaagacaaaataaattggacttattttctgtttggtgcgtgatatatt----ctgttttgcgcaatatctcattttgcttgctaattttttatgcagGTTTGCAGCTGCATTGATTAATCGTAAACTTGATTGCTGGGTGATGAATGTTGTTCCTGTTAGTGAGCCAAACACACTGCCTGTAATCTATGACCGGGGA

upper sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 6
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 6
gtattgtttttgtcttatttactttcttgttataaatttgcatttaggaattttcctatgagaatcttcaatcttcaatatattgagttttgcagATTTGCAGCAGCATTGATTAATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGCCCAAACACCTTGCCTGTTATATATGACCGTGGA
           || | |  || | | |  || | |  |   ||  ||| || ||    |     ||||||   || | |   |||  ||| ||||||||||||| ||| | | | |||| || || ||  |||||||| | |  ||||||||||| ||||| || ||||| |||||||| || ||||||||||||
-----------gtatgaaataatatttctttgttaggtattatacaggtatcttagcttatctctcttca---tttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttaggaattttcctatgagaatcttcaatcttcaatatattgagttttgcagATTTGCAGCAGCATTGATTAATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGCCCAAACACCTTGCCTGTTATATATGACCGTGGA
                             aatcttcaatatatt  TA-rich tract