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...taattgcttattatttcctaaaattctgctcatctagttgtggtgaattttacaattcataatatactgatatcccaatgtgttcctcttgaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
species | Glycine max |
transcript | GLYMA18G03870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAG ATGCTGGAGCTGTTCTTACATTTGGTTGGGGAACTTTATGGACAGEST: gi|207797662|gb|GD771474.1|GD771474
genomic: TTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgt ... gaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGA-CTTTATGGACAG
EST: ATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAG ATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
genomic: ATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgt ... gaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
aattttacaattcataatatactgatatcccaatgtgttcctcttgaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
tactgat putative branch site (score: 2)
ttcctcttg putative PPT
tacaattcataatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattgcttattatttcctaaaattctgctcatctagttgtggtgaattttacaattcataatatactgatatcccaatgtgttcctcttgaactgacagATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - tgcttat
- - - - - - - - - - - - -ctgctca
- - - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaatg