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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgtaatattgttcttggttttccatgagtatcttttcttcttgtgttatactctattttccaatttgttcttgcattataataataccatatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATAGACAAATCACAGAACTGAGAAATGCTTTAAATGCTCATATTGGTGACGT

Basic information

species Glycine max
transcript GLYMA18G02430.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330131|gb|FK020491.1|FK020491
EST:     CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG                         GAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
genomic: CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGgttggtttgt ... atatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
EST: gi|254319399|gb|GR830639.1|GR830639
EST:     CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG                         GAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
genomic: CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGgttggtttgt ... atatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
EST: gi|254318232|gb|GR832400.1|GR832400
EST:     CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG                         GAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
genomic: CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGgttggtttgt ... atatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
EST: gi|209698357|gb|BW678075.1|BW678075
EST:     CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG                         GAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA
genomic: CGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGgttggtttgt ... atatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatactctattttccaatttgttcttgcattataataataccatatttgcagGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATAGACAAATCACAGAACTGAGAAATGCTTTAAATGCTCATATTGGTGACGT
                               attataataataccat  TA-rich tract