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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttaatcagttcattcctctctctgtttgcatatgcttgtttatgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 6
gtcttaatcagttcattcctctctctgtttgcatatgcttgttt-atgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC
       |  |||||||||   || |||||| || |  |   || | ||      |   | |  || | ||  ||||||||||||  |||||||||||  | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |
------gttggttcattcc---ctttgtttg-atgttttgacttcacgtcataaattgtttatcatcttctc-aacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC

upper sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC
       |   ||  | || ||||| | | |||   |   | | | | | |  |   ||| ||  | || |||  ||||| || | | |||| || ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||  ||| |||||||| || ||||
------gttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctg-ttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

upper sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 2
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC
       |   ||  | || ||||| | | |||   |   | | | | | | ||   ||| || || |  |||  ||||| || | | |||| || ||||| ||||||||||||||||| | ||| |||||||||||||| ||||| |||||||||  ||| |||||||| || ||||
------gttgatttctccccctctcctctctgctactaaatttgtctctcttttgctactaaatatcta-ttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315635|gb|GR825444.1|GR825444
EST:     TCACTGTTGGCTATGATCAGAAAAATAATATTGATGCAGCTGTGAAAAAG                         TTTTCAGGAAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACT
genomic: TCACTGTTGGCTATGATCAGAAAAATAATATTGATGCAGCTGTGAAAAAGgtcttaatca ... gcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtttgcatatgcttgtttatgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC
                             ttttaac  putative branch site (score: 2)
                                          tttgctt  putative PPT
                             ttttaactgaaaattt  TA-rich tract