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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaagttgctcagatagcagtgactaagtaatgtagtttcattttgctcgtgttatatgattttaaattttttcagctgttgccacatactaaatgcagGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTGTTGAGTAGGTTCCAAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATCC

Basic information

species Glycine max
transcript GLYMA18G00430.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00430.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os11g28990.1 (Oryza sativa), 3'ss of exon 6
aaaaagttgctcagatagcagtgactaagtaatgtagtttcattt-tgctcgtgttatatgat-tttaaattttttcagctgttgccacatactaaatgcagGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTGTTGAGTAGGTTCCAAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATCC
|| |  |   | | ||     | | |    ||  | || |  ||| || | | ||| |   || | |  |||   | | |  || |    |   || | |||||||  |||||||||||||| |||||||| ||||||||  || | ||| | ||  |||| || |  ||| | || |||||||| ||    || || || |
aatagctcatttatatgaatattaattcacaacttggtctgttttatgattg-gttctgaaatgtgttcattagctgaaccatt-cagttttggaattacagGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcgtgttatatgattttaaattttttcagctgttgccacatactaaatgcagGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTGTTGAGTAGGTTCCAAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATCC
                                           tactaaa  putative branch site (score: 1)
      tgttatatgattttaa  TA-rich tract