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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggtatagtattaattaattgatacttcaatgttccattagGTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG

Basic information

species Glycine max
transcript GLYMA17G37150.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttca---gtttacagagataatctgttggtatagtattaattaattgatacttcaatgttcc-attagGTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG
                                               | |  ||  | || |||| |    |  |     | | | | ||| |||||    || |||    || |    || ||  | ||||| ||||| ||||||| |||||||| |||||| || || |||||||||||
----------------------------------------------gtaacttagccgtggtttttatgcatccatttttacactttattg-tatag----aactaaactgtattaatgtgatctgaatagGTCCTTGGGAACAAGTACCAGAACAAATTACTTGAGATGATTGATGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191151|gb|GD989167.1|GD989167
EST:     GGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAAT                         GTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG
genomic: GGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtca ... gttccattagGTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagataatctgttggtatagtattaattaattgatacttcaatgttccattagGTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG
                                              ttccatt  CT-rich tract
                 tatagtattaattaat  TA-rich tract