Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taactctattttttacttaaccctgctttgttctaagatatgcatttttaagttactcattgtcttagtttcacttaataagtaaatctgttgattttttttatacatgatgtcactttactatgaacacaggGGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATACTGCCAATGGGCCGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAAC

Basic information

species Glycine max
transcript GLYMA17G37040.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016921|gb|CX703663.1|CX703663
EST:     ATATAGACCTTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGG                         GGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC
genomic: ATATAGACCTTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGGtaactctatt ... tgaacacaggGGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC
EST: gi|57574958|gb|CX547933.1|CX547933
EST:     ATATAGACCTTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGG                         GGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC
genomic: ATATAGACCTTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGGtaactctatt ... tgaacacaggGGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC
EST: gi|15203237|gb|BI426005.1|BI426005
EST:     TTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGG                         GGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC
genomic: TTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGGtaactctatt ... tgaacacaggGGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaaatctgttgattttttttatacatgatgtcactttactatgaacacaggGGAGAACAAAATGCTGATCCAGCAACTGCTGTAGAATTTCTTGCCAAATACTGCCAATGGGCCGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAAC
          tgttgat  putative branch site (score: 4)
     aaatctgttgattttt  TA-rich tract