1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cattatttctaagttgtatgagttagaatgtttgattccattgttctcaatttccaagtgctggattcttctgtaatcgttatgaatgttgatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTACACGGTCTGCACGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTG
species | Glycine max |
transcript | GLYMA17G33510.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAG GAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTEST: gi|10844610|gb|BF070925.1|BF070925
genomic: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAGgtttgttgtt ... gatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCT
EST: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAG GAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTEST: gi|5677930|gb|AI939060.1|AI939060
genomic: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAGgtttgttgtt ... gatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCT
EST: CATATGAAAGCATCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAG GAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTEST: gi|18038847|gb|BM307141.1|BM307141
genomic: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAGgtttgttgtt ... gatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCT
EST: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAG GAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCT
genomic: CATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAGgtttgttgtt ... gatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCT
ctcaatttccaagtgctggattcttctgtaatcgttatgaatgttgatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTACACGGTCTGCACGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTG
tgttgat putative branch site (score: 4)
tttttc CT-rich tract
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattatttctaagttgtatgagttagaatgtttgattccattgttctcaatttccaagtgctggattcttctgtaatcgttatgaatgttgatttttcagGAATCCCGTTGCTCCAGAGAATGGAAGAGGGCACCAGAGAATGATAGACCTACACGGTCTGCACGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - tgtatga
- - - - - - - - - - - - - - - - tgattcc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt