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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatagcttagatcgcaatattgatgagGAAAACCGCACAACAAAGGATTTCCTGATTCTT

Basic information

species Glycine max
transcript GLYMA17G32180.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G32180.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------gtgatagcttagatcgcaatattgatgagGAAAACCGCACAACAAAGGATTTCCTGATTCTT
                                                                                                                                                                     ||||||||||||||||||||||||||| |||||| |||   |||||||||||| ||||||||
gttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcagTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatagcttagatcgcaatattgatgagGAAAACCGCACAACAAAGGATTTCCTGATTCTT
                                                                                              aatattgat  TA-rich tract